PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3365s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 302aa    MW: 33481.6 Da    PI: 9.2697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3365s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.51.9e-34592001128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                          lp+G++F+Ptd+e++ e+L+ kv+++       ++  e   +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++ 
  Araha.3365s0004.1.p  59 LPAGVKFDPTDQEVL-EHLEGKVRDDAkklhplID--EfirTIDGEnGICYTHPEKLP-GVNKDGTVRHFFHRPSKAYTTGTRKRRKVHt 144
                          799**********99.99******99966654422..22223554445**********.677788899******************7443 PP

                  NAM  80 ......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                + +W++tgk+++vls +g++ g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Araha.3365s0004.1.p 145 dsdvggETRWHKTGKTRPVLS-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200
                          455555788************.9*************6658999************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3853219IPR003441NAC domain
PROSITE profilePS5100533.4659219IPR003441NAC domain
PfamPF023653.6E-1560200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTWCNDRSDV QTVERIIPSP AAPESPVASL PVSCHKTCPS CGHNFKFHEQ AGIHDLPGLP  60
AGVKFDPTDQ EVLEHLEGKV RDDAKKLHPL IDEFIRTIDG ENGICYTHPE KLPGVNKDGT  120
VRHFFHRPSK AYTTGTRKRR KVHTDSDVGG ETRWHKTGKT RPVLSGGRVR GYKKILVLYT  180
NYGKQKKPEK TNWVMHQYHL GTSEEEKEGE LVVSKVFYQT QPRQCGGSAA ATAKDRPYLH  240
GLGGGRHLHY HLHHNNGNGK SNNGGGSAGA GEYYHNIPAL ISFNQTGIQN HLVHDSQPFI  300
P*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3365s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566580.0DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438444.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494590.0NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A087GHN20.0A0A087GHN2_ARAAL; Uncharacterized protein
STRINGXP_010438444.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.10.0NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]