PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.33521s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 191aa    MW: 22135.4 Da    PI: 9.6555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.33521s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-055577123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          +kC++C + F+++  L  H++ H
  Araha.33521s0001.1.p 55 FKCHYCFRNFPTSQALGGHQNAH 77
                          89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-65182No hitNo description
PROSITE profilePS5015711.0115582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009739Biological Processresponse to gibberellin
GO:0010026Biological Processtrichome differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKTHDFMNVN SFSPKERPIR LFGFEFGASH EESESKDSYN ENNESIKDDN KEKRFKCHYC  60
FRNFPTSQAL GGHQNAHKRE RQQTKRFNLH SNAAAFFHRH QNHIATSRFY EDRFSLEAAR  120
INDARLGLCS RYNSSASFNR DRSSYSRYMP WFIGDRQTRP TDVGGGSSSH GLLCESKKNV  180
PDQVTLDLRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAP0025430.0AP002543.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871225.11e-135zinc finger family protein
SwissprotQ9FG051e-127GIS2_ARATH; Zinc finger protein GIS2
TrEMBLD7LZS61e-135D7LZS6_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.6__609__AT5G06650.11e-135(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146591214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-128C2H2 family protein