PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3105s0046.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 160aa    MW: 17804.8 Da    PI: 7.6632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3105s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.4e-053860123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C++ F ++  L  H++ H
  Araha.3105s0046.1.p 38 FPCQYCPRKFYTSQALGGHQNAH 60
                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.86E-63465No hitNo description
PROSITE profilePS5015711.0533865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAEPPPSYHH FVGPAKPRSS SKRHSFSSSS HPTSHRLFPC QYCPRKFYTS QALGGHQNAH  60
KRERAAARRN LGVLANSPPI LDDNTFLRPY PCFYQNPFQG SSSGSEPVHQ EQTTMMTMGG  120
YDPFNPFPYV YPFGLSGNND GNGVMEEDEP LDLDLSLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026881e-171CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankBT0247031e-171BT024703.1 Arabidopsis thaliana At5g14010 mRNA, complete cds.
GenBankAY6126081e-171AY612608.1 Arabidopsis thaliana KNUCKLES (KNU) mRNA, complete cds.
GenBankAB0052301e-171AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871596.11e-92hypothetical protein ARALYDRAFT_488229, partial
SwissprotQ9FFX42e-86KNU_ARATH; Zinc finger protein KNUCKLES
TrEMBLD7M5Z11e-92D7M5Z1_ARALL; Putative uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__1363__AT5G14010.13e-92(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69662031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.13e-70C2H2 family protein