PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2952s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 294aa    MW: 33810.6 Da    PI: 10.3403
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2952s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.7e-2019111196
                          EEEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvl.tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          ffkvl +  dv+++++  lp +f++++  k e s ++++++++grsWev +  +k+++  y+ ++GW +Fv++n L  ++f++F+++g++
  Araha.2952s0002.1.p  19 FFKVLqSVVDVSSENLRALPHDFVRSFTDK-ELSGKMKIRTQWGRSWEVGI--SKNPRFyYMEKSGWDRFVRDNSLGNNEFITFTHKGNM 105
                          56666244688999999*******999655.6778****************..******566669***********************99 PP

                          EE..EEEE CS
                   B3  89 efelvvkv 96 
                           f+l+  +
  Araha.2952s0002.1.p 106 HFTLN--I 111
                          99554..3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-1914115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-1915121IPR015300DNA-binding pseudobarrel domain
CDDcd100177.58E-1818113No hitNo description
SMARTSM010197.3E-2019115IPR003340B3 DNA binding domain
PfamPF023621.9E-1819111IPR003340B3 DNA binding domain
PROSITE profilePS5086313.66220115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-11198290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-13199290IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-14205293IPR003340B3 DNA binding domain
CDDcd100173.12E-8212289No hitNo description
PROSITE profilePS508638.177246293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MATNPDFLRC KEERNNERFF KVLQSVVDVS SENLRALPHD FVRSFTDKEL SGKMKIRTQW  60
GRSWEVGISK NPRFYYMEKS GWDRFVRDNS LGNNEFITFT HKGNMHFTLN IFKLDGKEMM  120
QPPQSRALLA SSSRFKTEQG EDDKKEEVVS ELSNRGRTPA AESNGRKLNL RKKAAEESQE  180
SKKTEKVVRA RRDYAGASSS TATEFTSLIK QGYLKFLRLR TSVAKDHMPD EKTMFKIHHP  240
NGKKCWDVVF LGRFGVFSGG WSRLVKEYPL VVGDTCKFTF IKPEELLLVV SKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026883e-89CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0133943e-89AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863383.10.0hypothetical protein ARALYDRAFT_330738
SwissprotQ5BPT71e-157Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7MQM80.0D7MQM8_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80000810.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-149B3 family protein