PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.29348s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 221aa    MW: 24602.9 Da    PI: 10.5065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.29348s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166890123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C++C + F ++  L  H++ H
  Araha.29348s0001.1.p 68 FSCNYCQRKFYSSQALGGHQNAH 90
                          89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-66595No hitNo description
PROSITE profilePS5015711.4276895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDPSIKGDQE MLKIKKQGHQ DLELGLTLLP RGTTTSSELN LIDSFKTSSS STSHHHHQQE  60
HLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG QYYKMTLSSL PSSAFAFGHG  120
SVSRFASMAS LPLHGLVNNR STLGIQAHST IHKPFLGRQT ASLSHVFKQS INQKPTIGKM  180
LPEKFHLEVA GSNNSNMIGH FKSNQEDHNQ FKKIDLTLKL *
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.29348s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHZFPA0.0L39644.1 Arabidopsis thaliana zinc finger protein 1 (ZFP1) mRNA, complete cds.
GenBankATU535010.0U53501.1 Arabidopsis thaliana chromosome I cosmid g8261 DNA (cytosine-5-) methyltransferase, zinc finger protein 1, nucleoporin 98, poly A+ RNA export protein, plasma membrane ATPase 2, and serine/threonine protein kinase genes, complete cds.
GenBankBT0264060.0BT026406.1 Arabidopsis thaliana At1g80730 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF23A50.0AC011713.2 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887812.11e-146zinc finger protein 1
SwissprotQ424851e-141ZFP1_ARATH; Zinc finger protein 1
TrEMBLD7KX251e-145D7KX25_ARALL; Zinc-finger protein 1
STRINGfgenesh2_kg.2__2304__AT1G80730.11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM118581628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-132zinc-finger protein 1
Publications ? help Back to Top
  1. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]