PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2901s0008.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 203aa    MW: 22652.1 Da    PI: 5.0355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2901s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000152749123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC++C++ F     L  H++ H
  Araha.2901s0008.1.p 27 YKCKYCPRKFDKTQALGGHQNAH 49
                         9***************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.45E-62455No hitNo description
PROSITE profilePS5015711.782754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MLSLDSNYAS DISDDASATG SIENPMYKCK YCPRKFDKTQ ALGGHQNAHR REREVKKQHE  60
AFLVHLNQPE PDLYLYSYLH PHSFPNQYAL PPGFEQRRYK VDKIDNMSMV YNQYMGSSSS  120
GFLGLRSDPS QGMDRGWTFN GIPSQTQPQP LSSTSSPVCL DLCLGVGCSQ TQPQPEEPND  180
ATEDMDAEKE NDCSSLSLSL KL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0052450.0AB005245.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUG13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871138.11e-128zinc finger family protein
TrEMBLD7LYA91e-128D7LYA9_ARALL; Zinc finger family protein
STRINGfgenesh1_pm.C_scaffold_60003661e-128(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.11e-99C2H2 family protein