PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.25074s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 181aa    MW: 20663.6 Da    PI: 6.5279
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.25074s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573122.62e-38493398
                DUF573  3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93
                           +rlw+eeDei+lLqG+idfka+tg+sp+dd+++f++++kksisf+vsk+q+ +Kir LK+K+ +k+kk      +s++++hd+k+f+l+k
  Araha.25074s0001.1.p  4 LHRLWTEEDEISLLQGMIDFKAETGTSPHDDLNKFFDIAKKSISFDVSKNQFGDKIRGLKNKYFGKRKK------KSVESDHDKKCFGLAK 88
                          68*******************************************************************......8999************ PP

                DUF573 94 kiWgs 98
                          +iWgs
  Araha.25074s0001.1.p 89 SIWGS 93
                          ***95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.8E-30592IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
QTHLHRLWTE EDEISLLQGM IDFKAETGTS PHDDLNKFFD IAKKSISFDV SKNQFGDKIR  60
GLKNKYFGKR KKKSVESDHD KKCFGLAKSI WGSVEEDKEV VILGGDSELS NWFEKSFLVR  120
VVASLGVDEC FVKWKWSKVS EETKKKIEEK IKMVEAKECE LLSQKVDVLQ EVTSVIAETN  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankT12C221e-171AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence.
GenBankCP0026841e-171CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankAY0725041e-171AY072504.1 Arabidopsis thaliana unknown protein (At1g44810; T12C22.8) mRNA, complete cds.
GenBankAY0428611e-171AY042861.1 Arabidopsis thaliana Unknown protein (T12C22.8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564491.11e-95DNA-binding storekeeper protein-related transcriptional regulator
TrEMBLQ9LPF01e-95Q9LPF0_ARATH; DNA-binding storekeeper protein-related transcriptional regulator
STRINGAT1G44810.14e-95(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.13e-82DNA-binding storekeeper protein-related transcriptional regulator