PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24841s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 192aa    MW: 21749.1 Da    PI: 9.3321
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24841s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57385.66.5e-271731997
                DUF573 19 lidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                          +idfka+tg+sp+dd+++f++++k+sisf+vsk+q+ +Kir LK+K+ +k+kk      +s++++hd+k++el+k+iWg
  Araha.24841s0001.1.p  1 MIDFKAETGTSPYDDMNKFFDIAKESISFDVSKNQFGDKIRGLKNKYFGKRKK------KSVESDHDKKCLELAKSIWG 73
                          9****************************************************......8999***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-18173IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MIDFKAETGT SPYDDMNKFF DIAKESISFD VSKNQFGDKI RGLKNKYFGK RKKKSVESDH  60
DKKCLELAKS IWGLGVVESP VKSKKKKDES VAKANGKDKN LESLVEEDKE VGILRGDSES  120
SNWFDKSFLV RVVASLGVDE CIVKWKWSKV TMDTKKRIEE KMKLVEGKEF ELLSQKIDVL  180
KEVISVIAET I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankT12C228e-89AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence.
GenBankCP0026848e-89CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankAY0725048e-89AY072504.1 Arabidopsis thaliana unknown protein (At1g44810; T12C22.8) mRNA, complete cds.
GenBankAY0428618e-89AY042861.1 Arabidopsis thaliana Unknown protein (T12C22.8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886022.11e-102hypothetical protein ARALYDRAFT_899900
TrEMBLD7L6G91e-102D7L6G9_ARALL; Putative uncharacterized protein
STRINGscaffold_303870.11e-102(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.15e-82DNA-binding storekeeper protein-related transcriptional regulator