PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23900s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 345aa    MW: 39927.2 Da    PI: 7.5906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23900s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06247270123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y+Cp+C+++F ++  +  Hi++ H
  Araha.23900s0001.1.p 247 YTCPKCNRVFDTSQKFAAHISSmH 270
                           9*******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.61E-5245273No hitNo description
SMARTSM003550.003247270IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93247275IPR007087Zinc finger, C2H2
PROSITE patternPS000280249270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTSIPNGLYS YGDDTMNIHG FTPIEMMSSN LRNHESKIVQ SMFNTSDHTN HHGLFSSSRA  60
FNSYQDSHVS SSSFDFSNSH MSYHMRKNMV STFGMPCITQ FSNNPHLSQI SITQTITNSY  120
SAIVPTNNLI TSQNEYERAM NPNIFNSPLY PPNFVDKHVE KESEILNPTP LNTIFPHQTS  180
IFRRNLDMFS FSPKHHPHQY VSYRQPVKKH CGPTKHFEET FDDFDSKENS EYDGRTHSLP  240
YKKYGPYTCP KCNRVFDTSQ KFAAHISSMH YKNETIEEKF KRYNARNKKR SRETNQMIHE  300
ESRNNIQPEE RVAKGNGSNN NIASDIETLQ HQQIVKEEPI NDLF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23900s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ1315170.0AJ131517.1 Arabidopsis thaliana MYB37 homologue gene and ORF1.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874106.10.0uncharacterized protein LOC9308097
TrEMBLD7M1L50.0D7M1L5_ARALL; Zinc finger family protein
STRINGscaffold_602360.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-180C2H2-like zinc finger protein