PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23368s0027.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 464aa    MW: 50285.9 Da    PI: 9.6056
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23368s0027.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001183103323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C+ C+k F r  nL+ H r H
  Araha.23368s0027.2.p  83 CEVCNKGFQREQNLQLHRRGH 103
                           *******************88 PP

2zf-C2H212.90.00034157179123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +t+
  Araha.23368s0027.2.p 157 WKCDKCSKRYAVQSDWKAHSKTC 179
                           58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.06E-780103No hitNo description
PROSITE profilePS5015710.9781103IPR007087Zinc finger, C2H2
SMARTSM003550.02581103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355140122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-5145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.06E-7152177No hitNo description
SMARTSM00355140157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSSSYNTIAS SSAQTFLLSG AASGARPNNF NREEAARTMI QQPNSSVTPP PKKRRNQPGN  60
PNPDAEVIAL SPKTIMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKSNKEVRRK  120
VYLCPEASCV HHDPARALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG  180
TKEYRCDCGT IFSRRDSYIT HRAFCDALIQ ESARNPTVSF TAMAAAGGGG ARHGFYGGAS  240
SAHSHNLFGN NSNSGFTPLA AGYNLNRSSS DKFEDFVPQS TNPNPGPTNF LMQCSPNQGL  300
LAQNNQSLMN QHGLISLGDN TNHNLFNIGY FQDTKNSDQI GVPSLFTNGA DNNDPSAFLR  360
GLTSSSSPNV VVNDFGDSDN GNLQGLMNSL TATTDQQGRP TSLLDLHFGN NLSMGGADRL  420
TLDFLGVNGG IVSTVNGRGG RGGGPPLDAE MKFSHPNHPF GKA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1337660.0AY133766.1 Arabidopsis thaliana clone U18944 putative zinc finger protein (At1g14580) mRNA, complete cds.
GenBankAY0910410.0AY091041.1 Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890065.10.0T5E21.8
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLD7KBM30.0D7KBM3_ARALL; T5E21.8
STRINGfgenesh1_pm.C_scaffold_10012360.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein