PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23250s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 195aa    MW: 23183.1 Da    PI: 4.9382
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23250s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.12.6e-1781251128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           lp Gf+F+P+  e+ +++Lkkk+ g+++ + +v +e+ di++ +P+dLp     +e++wy+F+++++++        +t    W   g+
  Araha.23250s0005.1.p   8 LPIGFKFRPSKFEMANNFLKKKAFGQPIIARRVPEEChDIFSRHPRDLPGY--PREEHWYYFCRKRNHQ--------VT-CNLWTPIGE 85 
                           699************************99989999989***********43..4789******986654........33.368****** PP

                   NAM  89 dkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                           +++vl  k+++  v +++ +++ +++++  e+ dW+++e +l
  Araha.23250s0005.1.p  86 ETNVLYPKNRQlvVATRRRFTLVEKDEE--EEYDWFLDEISL 125
                           *****98555434889999999865554..59******9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-227142IPR003441NAC domain
PROSITE profilePS5100524.5128142IPR003441NAC domain
PfamPF023651.0E-89124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEPIYRPLPI GFKFRPSKFE MANNFLKKKA FGQPIIARRV PEECHDIFSR HPRDLPGYPR  60
EEHWYYFCRK RNHQVTCNLW TPIGEETNVL YPKNRQLVVA TRRRFTLVEK DEEEEYDWFL  120
DEISLRQTVS FSDWVFCHIK GKKIKPEFDY LPINESESES ESEDEENVDN NPAEILDLLR  180
EQDENVLPPP PPSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23250s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877033.11e-123NAC domain-containing protein 104
TrEMBLD7LLY91e-121D7LLY9_ARALL; Uncharacterized protein
STRINGscaffold_500654.11e-122(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-73NAC family protein