PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20457s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 319aa    MW: 36124.1 Da    PI: 6.1402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20457s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3651.2e-2095195198
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           f+k+l++sdv++++r++lpkk ae+h   ++ +e++ +++ed++g  +W++k++y  +++s++yvl+ ++ +Fv+a+gL+ gDf++ + 
  Araha.20457s0001.1.p  95 FQKELKNSDVSSLRRMILPKKAAEAHlpALECKEGIPIRMEDLNGlHVWTFKYRYwpNNNSRMYVLE-NTGDFVNAHGLQLGDFIMVY- 181
                           99**************************777788899********9*********89999999***9.******************99. PP

                           -SS.SEE..EEEEE- CS
                    B3  85 dgr.sefelvvkvfr 98 
                            ++  + ++v+++++
  Araha.20457s0001.1.p 182 -QDlYSNNYVIQARK 195
                           .66677777877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-2886200IPR015300DNA-binding pseudobarrel domain
CDDcd100175.09E-2893195No hitNo description
SuperFamilySSF1019361.15E-2293195IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-1795195IPR003340B3 DNA binding domain
PROSITE profilePS508639.57395197IPR003340B3 DNA binding domain
SMARTSM010191.0E-2295197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MMVDENVETK ASTLVASVDH DHHGFGSGSG HDHHGLSASV PLLGVNWKKR RMPRQRRSSS  60
SFNLLSFPPP MPPISHVQTP LPARKIDPTK LRFLFQKELK NSDVSSLRRM ILPKKAAEAH  120
LPALECKEGI PIRMEDLNGL HVWTFKYRYW PNNNSRMYVL ENTGDFVNAH GLQLGDFIMV  180
YQDLYSNNYV IQARKASEEE GDVTNVEEDD VYTNLTRIEN TVVNDLLLQD FNHHHNNNNN  240
NNNNNNNNNN KCSYYYPIID DVTTTTGSFV YDTTALTSND TPLDFLGGHT TTTNNYYSKF  300
GTFDGLGSVE NISLDDFY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0162650.0AF016265.1 Arabidopsis thaliana FUSCA3 (FUS3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876992.10.0hypothetical protein ARALYDRAFT_484455
SwissprotQ9LW310.0FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLD7LR960.0D7LR96_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__447__AT3G26790.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71382638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-172B3 family protein