PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19508s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 290aa    MW: 33428.9 Da    PI: 6.7841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19508s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018120141223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           +C  Cgk F + ++L  H+r+H
  Araha.19508s0004.1.p 120 RCCLCGKEFQTMHSLFGHMRRH 141
                           7********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.99E-64973No hitNo description
SMARTSM003551.35173IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3075178IPR007087Zinc finger, C2H2
PfamPF139120.0165373IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SuperFamilySSF576675.99E-6114141No hitNo description
SMARTSM003550.091119141IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806119141IPR007087Zinc finger, C2H2
PfamPF139123.6E-4120143IPR007087Zinc finger, C2H2
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKRTRDLYDD DDSSSSSESE EFHRTKLRVK VKLPEERSED EDESPQPLRK HFCVICEKQF  60
SSGKAYGGHV RIHSTEYNNK GKMKKIKKMK MKKKRKIGLL KKEKEKEIDL IRADVEGKIR  120
CCLCGKEFQT MHSLFGHMRR HPDRSWKGIR PPPPPEKFNL SYLGDDDDDV DDDEDEDVMS  180
RSMMMSDVPE DVQEAACILM MLSYASSNYW AGIKKAMESP KSEVRSSSCY KDDKGKDEVL  240
GDGGMDDKKS LIVDMKIKMN SPRDEAKRSL GFDLNQPPYH EDHPDSCWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18394KKIKKMKMKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0051680.0AC005168.3 Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880847.11e-163hypothetical protein ARALYDRAFT_481569
TrEMBLD7LFE41e-163D7LFE4_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.4__629__AT2G26940.11e-162(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-116C2H2 family protein