PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19277s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 298aa    MW: 31755.9 Da    PI: 6.6756
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19277s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.47.3e-3652124374
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 
                           + k++ +++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++  
  Araha.19277s0002.1.p  52 APKRPAKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsV 124
                           56899**********************************************************8888844431 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-2957132IPR005333Transcription factor, TCP
PROSITE profilePS5136927.23457111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MESNQEGKAI QEIDQVATMT HLSNPNPKTK PGMMMLMKQE DGYLQPVMSK PAPKRPAKDR  60
HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL LERAEPAIIE ATGTGTVPAI  120
AVSVNGTLKI PTSAPVESNG GGDGDGDLMK KRRKRNCTSE FVDVNEHDSC YSSVTSGLAP  180
ITASNYGVNI MNVNTTGLMP FWPMGMGTAY VTGGPNQMGQ MWAIPTVATA SFLNVGARPV  240
SSYDVSNASA AEPEMETSGG GGATQPLRDF SLEIYDKKEL QFLGGSGDSS PSSCHET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149153KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19277s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373300.0AC237330.1 Arabidopsis lyrata clone JGIFAFI-57C3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871355.10.0transcription factor TCP19
RefseqXP_020871356.10.0transcription factor TCP19
SwissprotQ9LT891e-176TCP19_ARATH; Transcription factor TCP19
TrEMBLD7MRK30.0D7MRK3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1074__AT5G51910.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-179TCP family protein