PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1744s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 387aa    MW: 43613.4 Da    PI: 6.8902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1744s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05220239120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  Araha.1744s0003.1.p 220 FSCPVCFKTFNRYNNMQMHM 239
                          89*****************9 PP

2zf-C2H214.40.00011304326123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk F  + + ++H +++
  Araha.1744s0003.1.p 304 FMCRKCGKAFAVRGDWRTHEKNC 326
                          89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-6220239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.38220242IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64220247IPR007087Zinc finger, C2H2
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
SuperFamilySSF576671.9E-6286324No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5300324IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808304324IPR007087Zinc finger, C2H2
SMARTSM0035549304324IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MTDPYSNFFT DWFKSNPFHH YPNSSTNPSS HPHPPPLPLP PPSSFFFFPQ SGDLRRPPPP  60
PTPPPSPPLR EALPLLSLSP ANKQQDHHHN HDHLIQEPPS TSMDVDYDHH HQDDHHNLDE  120
DDHDVTVALH IGLPSPSATE MASLLMMSSS SSSSRTTHHH EDMNHKKDLD HDYSHGAAGG  180
GEDDDEDSVG GDGGCRISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW  240
GHGSQYRKGP ESLRGTQPTG MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG  300
IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHGAYGI  360
DGFDEEDEPA SEVEQLDNDH ESMQSK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1744s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191326.10.0C2H2-type zinc finger family protein
SwissprotQ9SVY10.0ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A178VLW50.0A0A178VLW5_ARATH; WIP2
STRINGAT3G57670.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.10.0C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]