PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17241s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 232aa    MW: 26383.1 Da    PI: 10.3682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17241s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-18130217196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k +++s+v+   +l lp +f+++h gk+  +  +tl de+g+++e  +  rk++    l++GW +F+ a++L  gD++vF+l++r+ 
  Araha.17241s0002.1.p 130 FVKSMLQSHVSGGFWLGLPVQFCRSHLGKQ--DGVITLIDEEGEEYETIYLARKNG----LSGGWMGFAVAHNLAFGDTLVFELVHRTA 212
                           89************************6663..448***************667776....*************************9999 PP

                           E..EEEE CS
                    B3  90 felvvkv 96 
                           f  +v +
  Araha.17241s0002.1.p 213 F--KVYI 217
                           9..5555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-24123220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-19125219IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-25128219No hitNo description
PROSITE profilePS5086312.083130221IPR003340B3 DNA binding domain
PfamPF023621.0E-15130218IPR003340B3 DNA binding domain
SMARTSM010192.9E-25130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVVAKQSNYE EFRLKRVEEN KKRMEALNLQ KLSQNLNSTS VKNSPMKKRS IPRTPEKQMV  60
IVRRSSRISN SSSIPVYREV DVQRIQIRRR GLSKRRDLSN RVYVSEEIRE EAISRAEKFQ  120
DELGSGYPSF VKSMLQSHVS GGFWLGLPVQ FCRSHLGKQD GVITLIDEEG EEYETIYLAR  180
KNGLSGGWMG FAVAHNLAFG DTLVFELVHR TAFKVYITRV GSSGESSKDM S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026882e-80CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0076472e-80AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865495.11e-146transcriptional factor B3 family protein
SwissprotQ9FMZ41e-135Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLD7MRH41e-146D7MRH4_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_80004731e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-117B3 family protein