PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17006s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 1011aa    MW: 113257 Da    PI: 6.6516
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17006s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034893918123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           y+C    C++sFs+  +L+ H r+ +
  Araha.17006s0006.1.p 893 YQCDmeGCTMSFSSEKQLTLHKRNiC 918
                           99********************9877 PP

2zf-C2H215.54.8e-05918940323
                           ET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                           Cp   Cgk F ++ +L++H+r+H
  Araha.17006s0006.1.p 918 CPvkGCGKNFFSHKYLVQHQRVH 940
                           9999*****************99 PP

3zf-C2H212.40.000479761002123
                            EEET..TTTEEESSHHHHHHHHHH..T CS
               zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                            y+C    Cg++F+  s++ rH r+  H
  Araha.17006s0006.1.p  976 YVCAepGCGQTFRFVSDFSRHKRKtgH 1002
                            899999****************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5118416.888191IPR003347JmjC domain
PfamPF023735.6E-171974IPR003347JmjC domain
SuperFamilySSF511971.87E-1122110No hitNo description
SMARTSM003557.5893915IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.173916945IPR007087Zinc finger, C2H2
SMARTSM003550.01916940IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.3E-7917944IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280918940IPR007087Zinc finger, C2H2
SuperFamilySSF576672.26E-10933974No hitNo description
Gene3DG3DSA:3.30.160.606.9E-9945969IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015946970IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.928946975IPR007087Zinc finger, C2H2
PROSITE patternPS000280948970IPR007087Zinc finger, C2H2
SuperFamilySSF576672.27E-8964998No hitNo description
Gene3DG3DSA:3.30.160.601.3E-9970999IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.629761002IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0329761007IPR007087Zinc finger, C2H2
PROSITE patternPS0002809781002IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1011 aa     Download sequence    Send to blast
EVVRVHGYGG ELNPLVTFST LGEKTTVMSP EVFVKAGIPC CRLVQNPGDF VVTFPGAYHS  60
GFSHGFNFGE ASNIATPEWL RMAKDAAIRR AAINYPPMVS HLQLLYDFAL ALGSRVPTSI  120
NAKPRSSRLK DKLRSEGERL TKKLFVQNII HNNELLYSLG KGSPVALLPQ SSSDISVCSD  180
LRIGSHLITN QENPIQLKSE DLSSDSVMVG LSNGLKDTVS VKEKFTSLCE RSRNHLASRE  240
KDTQEILSDA ERRKNDGAVA LSDQRLFSCV TCGVLSFDCV AIVQPKEAVA RYLMSADCSF  300
FNDWTAASGS ANLGQAARSL HPLSTEKHDV NYFYNVPVQT MDHSMKTGDQ RTSTTSLTMA  360
HKDNGALGLL ASAYGDSSDS EEEGQKGLDV PTSEGETKKY DKEDPDGNEE ARDGRTSDFN  420
SQRLTSEQNR LSKGGNSSLL EIALPFIPRS DDDSCRLHVF CLEHAAEVEQ QLRPFGGIHI  480
MLLCHPEYPR IEAEAKIVAE ELVINHEWND TEFRNVTRED EETIQAALDN VEAKGGNSDW  540
TVKLGINLSY SAILSRSPLY SKQMPYNSVI YNAFGRSSPS TSSPLKPEVS GKRSSRQRKY  600
VVGKWCGKVW MSHQREDGVS DDTSEDHSYK QQWRASGNEE ESYFETGNTV SGDSSNQMSD  660
QQLKGIRRHR GVKEFESDDE VSDRSLGEEY TVRGCAASES SMENGFQQSM YDDDDDDDDD  720
DINRHPRGVP RSERITVFRN PVSYDSEENG IYHQRGRVSR SNRQANRMGG EYDSEENSLE  780
EQDFCSTGKR QTRSTAKRKV KIETVRSPRD TKGRTLQEFA SGKKNEELDS YMEGPSTRLR  840
VRNLKPLRAA SETKPKKIGK KRSGNASFSR VATEEDVEED EEAENEEEEC AAYQCDMEGC  900
TMSFSSEKQL TLHKRNICPV KGCGKNFFSH KYLVQHQRVH SDDRPLKCPW KGCKMTFKWA  960
WSRTEHIRVH TGARPYVCAE PGCGQTFRFV SDFSRHKRKT GHSVKKTKKR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C7e-158959968113PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6644990.0AY664499.1 Arabidopsis thaliana relative of early flowering 6 (REF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875902.10.0hypothetical protein ARALYDRAFT_485204
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLD7LRW50.0D7LRW5_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__1196__AT3G48430.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52592843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6