PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1504s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 226aa    MW: 25488 Da    PI: 7.7741
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1504s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP74.43.5e-2323811770
                  TCP 17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssa 70
                          R  R+Rl+++ca ++F+L+ eLGf++d++t+ WLl++a+pai ++tg      s++++
  Araha.1504s0001.1.p 23 DRNNRIRLPVSCASQIFQLTHELGFKTDGETVGWLLRNAEPAIFAATGHsvnttSNDTS 81
                         3667*********************************************5543322222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136915.0231268IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-192383IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVSKNNKNNI ERKGRRTPRS SKDRNNRIRL PVSCASQIFQ LTHELGFKTD GETVGWLLRN  60
AEPAIFAATG HSVNTTSNDT SNEFIHSYMN IGTHNNYHYT DTSGVVYNNN YNDTSGVVYR  120
NYYNCTIDNS VHYADTSGVV SHRRENITGH HGLVFPAATM AEYGPATSFP TNDMRENGHL  180
MVNQNRSVML RPSVSQQQPQ PQPLFDEFYK VEMGNSEQTY VPSRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1504s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875712.11e-122transcription factor TCP16
TrEMBLD7LNL11e-120D7LNL1_ARALL; Uncharacterized protein
STRINGscaffold_501359.11e-121(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16163510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.15e-32TCP domain protein 16