PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1448s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 305aa    MW: 33923.5 Da    PI: 5.0911
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1448s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011131323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C++C+ksFs+   L  H+r H
  Araha.1448s0006.1.p 11 CQICKKSFSNGKALGGHMRAH 31
                         *******************98 PP

2zf-C2H211.80.00076274296123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C++C+++F +   L  H + H
  Araha.1448s0006.1.p 274 YECQICNRVFASGQALGGHKKIH 296
                          99**********99999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.18936IPR007087Zinc finger, C2H2
SMARTSM003550.6931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.5E-71031No hitNo description
PfamPF139123.9E-81032IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-41133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576678.5E-7223250No hitNo description
PROSITE profilePS501579.598228255IPR007087Zinc finger, C2H2
PfamPF139123.0E-9228251IPR007087Zinc finger, C2H2
SMARTSM003550.28228250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
SuperFamilySSF576671.99E-5272297No hitNo description
PROSITE profilePS5015710.492274296IPR007087Zinc finger, C2H2
PfamPF139128.1E-11274296IPR007087Zinc finger, C2H2
SMARTSM003550.029274296IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MYSLLKATKN CQICKKSFSN GKALGGHMRA HTRKLSAGSS SSTGSITPSI RPCNNLGASF  60
RPHETVLVRS VHTSEVVGGP KLDLNKEGEQ QITAKRKIVV VDLEEEDSTE SKSDITIEES  120
ALCLLQMKSD PSEYIQNPKS IDSLVSTRKR KDTEKYIVID SEEDQEDSDE YVAEDEDEDE  180
DDEDEDIKFL TSDMGDLTGD SDEDEDDYAD ENAYYGGKER RGKKQSKYTC DICGQVLHSY  240
QALGGHRTSH RNKRLKISDK NHSAEDGPVV RRGYECQICN RVFASGQALG GHKKIHYMFL  300
APPK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0168870.0AB016887.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCI2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864733.11e-162hypothetical protein ARALYDRAFT_496306
TrEMBLD7MV231e-162D7MV23_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.8__2122__AT5G61470.11e-161(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.11e-122C2H2-like zinc finger protein