PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.14380s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 799aa    MW: 87599.5 Da    PI: 8.0376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.14380s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.2e-18300395194
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k+l+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g++W+++++y  +++s++yvl+ G     ++  L++gD+v+F+++
  Araha.14380s0003.1.p 300 FEKTLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPLKIQDVRGKEWTFQFRYwpNNNSRMYVLE-GVTPCIQSMMLQAGDTVTFSRV 387
                           99**************************666678889*****************89999999***9.********************76 PP

                           SSSEE..EE CS
                    B3  86 grsefelvv 94 
                           +  +++l +
  Araha.14380s0003.1.p 388 D-PGGKLIM 395
                           5.6665555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-28297407IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-19297395IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-23298395No hitNo description
PROSITE profilePS5086310.616300401IPR003340B3 DNA binding domain
SMARTSM010191.9E-22300400IPR003340B3 DNA binding domain
PfamPF023626.8E-16300395IPR003340B3 DNA binding domain
PROSITE profilePS5105013.224546596IPR011124Zinc finger, CW-type
PfamPF074961.1E-8552593IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MFEVKMVSKM CMNASCGTTS TVEWKKGWAL RSGLLADLCY RCGSAYESSL FCEQFHKDQS  60
GWRECYLCNK RLHCGCIASK VTIELMDYGG VGCSTCTCCH QLNLNTRGEN PGVFSRLPMK  120
PLADRQHVNG ESGMNIDGGR NEAGLFSQPL VMGGDKREEF MPHRGLGQLM NSENTSTGYR  180
LDAAGEMHES SPSQPSLNMG LAVNPFSPSF ATEGLEGKKH IGASQPNMVH CSASNILQKP  240
SKPAISTPPV ASKSAQARIG RPPVEGRGKG HLLPRYWPKY TDKEVQQISG NLNLNIVPLF  300
EKTLSASDAG RIGRLVLPKA CAEAYFPPIS QSEGIPLKIQ DVRGKEWTFQ FRYWPNNNSR  360
MYVLEGVTPC IQSMMLQAGD TVTFSRVDPG GKLIMGSRKA ANAGDMQGCG LTNGTSTEDT  420
SSSGVTENPP SINGSSCPSL IPQELNGMPE NLSSQKSETN GGRIGDDPTR VKEKKRTRTI  480
GAKNKRLLLH SEESMELRLT WEEAQDLLRP SPSAKPTIVV IEEKEIEEYD EPPVFGKRTI  540
VTTRPSGEQE RWATCDDCSK WRRLPVDALL PFKWTCIDNV WDVSRCSCSA PEESLKELEN  600
VLKVGREYKK RRTGESQAAK SQQEPCGLDA LASAAVLGDT IGEPEVATTT RHPRHRAGCS  660
CIVCIQPPSG KGRHKPTCGC TVCSTVKRRF KTLMMRRKKK QLERDVTAAE DKKKKDMELA  720
ESDKSKEEKE VNTARIDLNS DPYNKEDAEA VAVEKEESRK RAIGQCSGVV TQGAGDVLGV  780
TELEGEAKKV GEEPRVSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-1629941413130DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1686698KRRFKTLMMRRKK
2697714KKKQLERDVTAAEDKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0624920.0AY062492.1 Arabidopsis thaliana putative VP1/ABI3 family regulatory protein (At2g30470; T6B20.17) mRNA, complete cds.
GenBankAB2065530.0AB206553.1 Arabidopsis thaliana HSI2 mRNA for transcription factor B3-EAR motif, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881112.10.0high-level expression of sugar-inducible gene 2
SwissprotQ8W4L50.0VAL1_ARATH; B3 domain-containing transcription repressor VAL1
TrEMBLD7LC550.0D7LC55_ARALL; High-level expression of sugar-inducible gene 2
STRINGscaffold_401535.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69232440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2