PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1350s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 102aa    MW: 11755.5 Da    PI: 9.979
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1350s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.9e-12896289
                         EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                         +k+l+ sd + ++ l+lpk+++e++       ++++++++ + d  ++s+ v+l  r ++++ ++++GWk+  +a  Lk+gD++ ++ ++ +
  Araha.1350s0002.1.p  8 VKKLKDSDLSYNNALYLPKDYVENIvrstgVPIPRNGIQVEILDN-NNSYWVNL--RENQKGPYIGNGWKNIKDARSLKTGDVIKLYWKD-T 95
                         6999******************999*9988455678888999995.566669**..99999************************99543.4 PP

                         E CS
                   B3 89 e 89
                         +
  Araha.1350s0002.1.p 96 K 96
                         4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-12294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-15396IPR015300DNA-binding pseudobarrel domain
CDDcd100177.96E-136100No hitNo description
SMARTSM010194.1E-87101IPR003340B3 DNA binding domain
PROSITE profilePS508639.5027101IPR003340B3 DNA binding domain
PfamPF023621.2E-9896IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MNPNMMLVKK LKDSDLSYNN ALYLPKDYVE NIVRSTGVPI PRNGIQVEIL DNNNSYWVNL  60
RENQKGPYIG NGWKNIKDAR SLKTGDVIKL YWKDTKFIFS M*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886734.11e-67hypothetical protein ARALYDRAFT_893748
SwissprotQ8GWU13e-51Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLD7KYM61e-67D7KYM6_ARALL; Putative uncharacterized protein
STRINGscaffold_200822.14e-67(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.12e-52B3 family protein