PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12581s0007.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 296aa    MW: 31831.5 Da    PI: 8.0055
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12581s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.23e-20154188135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Araha.12581s0007.1.p 154 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 188
                           ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-19148200IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.943148184IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-13151191No hitNo description
Gene3DG3DSA:3.30.50.101.2E-16152188IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.38E-12153185No hitNo description
PfamPF003207.2E-18154188IPR000679Zinc finger, GATA-type
PROSITE patternPS003440154179IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVYEQNGEDY  60
HHSSSVVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS NFWDLLHTKN NNSKTTPYNN  120
VPSFSTNKPT RGCSGGGGGG GGGSGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG  180
IRFKKEERRT TAASGNTVVG AAPVQTDQYG HHNSGYNNYH AATGNNNNNG TPWAHHHSTQ  240
RVPCNNPANE IRFMDDYGSG LANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133143SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (including its own promoter and GATA21 promoter), thus regulating the expression of genes mostly involved in hormone responses and floral organ specification (including genes regulating hormones responses) (PubMed:23335616, PubMed:26390296). Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:15367721, PubMed:23335616). Coregulates, with AGO10/PNH, the shoot apical meristem (SAM) organization. Regulates floral organ development via the promotion of JAG and NPR5/BOP2 expression. Modulates cytokinin homeostasis in organ boundaries by regulating CKX3 expression (PubMed:26390296). Involved in cell proliferation and differentiation (PubMed:15367721). Required to position the inductive proembryo boundary via the regulation of gene expression and for early embryonic development (PubMed:20643354). Together with GIF1/AN3, mediates cotyledon identity by preventing ectopic root formation through the repression of PLT1 expression (PubMed:22669825). {ECO:0000269|PubMed:15367721, ECO:0000269|PubMed:20643354, ECO:0000269|PubMed:22669825, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:26390296}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12581s0007.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed via a negative regulatory feedback loop. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0867460.0AY086746.1 Arabidopsis thaliana clone 27213 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876050.10.0GATA transcription factor 18
SwissprotQ8LC790.0GAT18_ARATH; GATA transcription factor 18
TrEMBLD7LTK20.0D7LTK2_ARALL; Predicted protein
STRINGAl_scaffold_0005_19520.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.10.0GATA family protein
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]