PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11754s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-X1
Protein Properties Length: 884aa    MW: 99302 Da    PI: 8.3229
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11754s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.68.4e-06241269220
              zf-NF-X1   2 G..........kHkCqklCHeGpCppCpq 20 
                           G          +H C ++CH G+CppC++
  Araha.11754s0001.1.p 241 GdvcervldcdIHNCREICHDGECPPCRE 269
                           455555555559***************85 PP

2zf-NF-X116.51.8e-05357376119
              zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                           CG H+C + CH+GpC + C+
  Araha.11754s0001.1.p 357 CGYHRCPERCHRGPCLEtCR 376
                           *****************997 PP

3zf-NF-X117.77.7e-06431455119
              zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                           CG      +HkCq++CH GpC pCp
  Araha.11754s0001.1.p 431 CGkklrcrNHKCQSPCHQGPCAPCP 455
                           777777779***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359087151IPR019786Zinc finger, PHD-type, conserved site
CDDcd060087.28E-5186234No hitNo description
PfamPF014222.5198215IPR000967Zinc finger, NF-X1-type
SMARTSM004388.1198216IPR000967Zinc finger, NF-X1-type
CDDcd060081.50E-8240288No hitNo description
PfamPF014225.5E-4250268IPR000967Zinc finger, NF-X1-type
SMARTSM004383.1E-4250269IPR000967Zinc finger, NF-X1-type
CDDcd060086.79E-7293333No hitNo description
PfamPF014220.047303321IPR000967Zinc finger, NF-X1-type
SMARTSM004380.038303322IPR000967Zinc finger, NF-X1-type
CDDcd060082.70E-9347396No hitNo description
PfamPF014220.0013357376IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035357377IPR000967Zinc finger, NF-X1-type
CDDcd060089.19E-7400448No hitNo description
PfamPF014220.036410428IPR000967Zinc finger, NF-X1-type
SMARTSM004380.33410429IPR000967Zinc finger, NF-X1-type
CDDcd060084.23E-11427475No hitNo description
PfamPF014227.1E-4431455IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0034437456IPR000967Zinc finger, NF-X1-type
PfamPF01422140483490IPR000967Zinc finger, NF-X1-type
SMARTSM0043876494515IPR000967Zinc finger, NF-X1-type
PfamPF014224.8504514IPR000967Zinc finger, NF-X1-type
PfamPF0142277523532IPR000967Zinc finger, NF-X1-type
SMARTSM00438140523568IPR000967Zinc finger, NF-X1-type
PfamPF014220.12605615IPR000967Zinc finger, NF-X1-type
SMARTSM0043814605636IPR000967Zinc finger, NF-X1-type
CDDcd060082.14E-4646675No hitNo description
SMARTSM004380.053646664IPR000967Zinc finger, NF-X1-type
PfamPF014220.097647663IPR000967Zinc finger, NF-X1-type
SMARTSM0043848709738IPR000967Zinc finger, NF-X1-type
PfamPF014226.9711723IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MTNMAGTATT EFRWKSPPQP PPPQQTLSES DSDSGSDSDN HQHRHNDLSN SIFKAYLDCH  60
SSSSPSSIDL AKIQSFLASS SSGAVSCLIC LERIKRTDPT WSCTSSCFAV FHLFCIQSWA  120
RQCLDLQAAR AVTRPSSNPT EPEAVWNCPK CRSSYQKTKI PRRYLCYCGK EEDPPDDNPW  180
ILPHSCGEVC ERPLSNNCGH CCLLLCHPGP CASCPKLVKA KCFCGGVEDV RRCGHKQFSC  240
GDVCERVLDC DIHNCREICH DGECPPCRER AVYKCSCGKV KEEKDCCERV FRCEASCENM  300
LNCGKHVCER GCHSGECGLC PYQGKRSCPC GKRFYQGLSC DVVAPLCGGT CDKVLGCGYH  360
RCPERCHRGP CLETCRIVVT KSCRCGGTKK QVPCHQELAC ERKCQRVRDC ARHACRRRCC  420
DGECPPCSEI CGKKLRCRNH KCQSPCHQGP CAPCPIMVTI SCACGETHFE VPCGTETNQK  480
PPRCRKLCHV TPLCRHGQNQ KPHKCHYGAC PPCRLLCDEE YPCGHKCKLR CHGPRPPPNR  540
EFILKPTKKM LNIQAESTPG SPCPRCPELV WRPCVGHHLA AERMMVCSDR TQFACNNLCG  600
NPLPCGNHYC SFICHALDIR SSSLDKRSES CEKCDLHCQK ERTPRCQHPC PRRCHPGDCP  660
PCKTLVKRSC HCGAMVHAFE CIYYNTMSEK DQMKVRSCRG PCHRKLPNCT HLCPEICHPG  720
QCPLPEKCGK KVVVRCKCLT LKKEWVCQDV QAAHRATGSD PKEVPKNQFG VGLLPCDSNC  780
KSKLQMAESV LKQRNVKEIE EKEEPSGKNA SKRRKRRERG QDIQETTRLQ KLAVITKRIL  840
MVVMLMTMLA AVSYYGYKGL LWLSDWMNEV EEQRQKSRRY PRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2286900.0AK228690.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL16-04-K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873216.10.0transcription factor
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLD7LYZ50.0D7LYZ5_ARALL; Transcription factor
STRINGfgenesh2_kg.6__500__AT5G05660.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors