PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11287s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 376aa    MW: 43276.6 Da    PI: 6.6444
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11287s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.25.1e-24955147
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          kr e++snrqvt++kR+ngilKKA+ELS+LCd+++ +++fs+tg+  
  Araha.11287s0004.1.p  9 KRLESTSNRQVTYTKRKNGILKKAKELSILCDIDIVLLMFSPTGRAN 55
                          689*****************************************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.763161IPR002100Transcription factor, MADS-box
CDDcd002662.82E-27282No hitNo description
SuperFamilySSF554553.53E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-20323IPR002100Transcription factor, MADS-box
PfamPF003197.0E-201157IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRANAFHGE  60
HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHDFLGAR NQTIEGLSNQ  120
VAIYQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQIHKEH YRKNQLLPIE  180
CATTQFHSGI QLPMAMGGNS SMQEAHSMSW LPDNDNQQTI LPGDSSFLPH REMDGPIPVY  240
SSCFFESTKP EDQICSNPGQ QFEHLEQQGN GCLGLQQLGE EYSYPTQFGT TLGMEDDQEK  300
KIKSEMELNN LQQQQQQDPS MYDPMANNNG GCFQIPHDQS MFVNDHHHHH HHHHHHQNWV  360
PDSMFGQTSY NQQPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-14192190Myocyte-specific enhancer factor 2B
1tqe_Q2e-14192190Myocyte-specific enhancer factor 2B
1tqe_R2e-14192190Myocyte-specific enhancer factor 2B
1tqe_S2e-14192190Myocyte-specific enhancer factor 2B
6c9l_A2e-14192190Myocyte-specific enhancer factor 2B
6c9l_B2e-14192190Myocyte-specific enhancer factor 2B
6c9l_C2e-14192190Myocyte-specific enhancer factor 2B
6c9l_D2e-14192190Myocyte-specific enhancer factor 2B
6c9l_E2e-14192190Myocyte-specific enhancer factor 2B
6c9l_F2e-14192190Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11287s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1431720.0AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867390.10.0agamous-like MADS-box protein AGL65 isoform X2
SwissprotQ7X9I00.0AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLD7KH660.0D7KH66_ARALL; AGL102
STRINGBostr.7128s0485.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.10.0AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]