PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10656s0016.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 295aa    MW: 33933.6 Da    PI: 9.3357
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10656s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.12.4e-51331571128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lp+GfrFhPtdeelv++yL+++++++++++  vi+e+d+yk++Pw+Lp+++  +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg d
  Araha.10656s0016.1.p  33 LPAGFRFHPTDEELVKFYLCRRCASEPINV-PVIAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGSGYWKATGAD 120
                           799***************************.89***************7666789********************************** PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k++ +   ++ g+kk Lvfy g+apkg+kt+W+mheyrl
  Araha.10656s0016.1.p 121 KPIGK--PKTLGIKKALVFYAGKAPKGVKTNWIMHEYRL 157
                           ***98..778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6125185IPR003441NAC domain
PROSITE profilePS5100559.09933185IPR003441NAC domain
PfamPF023651.6E-2634157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
TKIRFKGFKN SKSNLIHKKT KNFFQKMKAE LNLPAGFRFH PTDEELVKFY LCRRCASEPI  60
NVPVIAEIDL YKFNPWELPE MALYGEKEWY FFSHRDRKYP NGSRPNRAAG SGYWKATGAD  120
KPIGKPKTLG IKKALVFYAG KAPKGVKTNW IMHEYRLANV DRSASTNKKN NLRLDDWVLC  180
RIYNKKGTME KYYPAADEKP TAKMSTSDSR CSSHVISPDV TCSDNWEVES EPKWINLEDA  240
LEAFNDTSMF SSIDLLQNDA FVPQFAYQSS EFVDSFQDPL EQKPFLNWNF APQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-832819110174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10656s0016.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0884310.0AY088431.1 Arabidopsis thaliana clone 6637 mRNA, complete sequence.
GenBankBT0008960.0BT000896.1 Arabidopsis thaliana clone C104908 unknown protein (At5g63790) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866576.10.0NAC domain-containing protein 102
SwissprotQ8H1150.0NA102_ARATH; NAC domain-containing protein 102
TrEMBLD7MPS80.0D7MPS8_ARALL; Predicted protein
STRINGAl_scaffold_0008_29130.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.10.0NAC domain containing protein 102
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]