PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0769s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 347aa    MW: 39066.2 Da    PI: 5.0701
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0769s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.48.7e-41822252125
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..........eaesssss 81 
                           +kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aike ++ ++ ++++           e+e++++ 
  Araha.0769s0003.1.p  82 VVKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVVQAKNLNNEDEdfgnnggdvaEEEEEEE- 170
                          589*************************************************************4444422222322222111111111. PP

                  TCP  82 asnsssg................kaaksaakskksqksaasalnlak.esrakarararer 125
                                +                ++   + k+ +++k++++++n++   srakar +a+e 
  Araha.0769s0003.1.p 171 ------EdgdksfvygsspdscgEKVVCEVKKAEKRKKKSEVSNMSSeGSRAKARGKAKEM 225
                          ......1233455677888788777777888888888888888888878999999999884 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3984226IPR005333Transcription factor, TCP
PROSITE profilePS5136935.37184142IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSSNNDGNN NGVYPLSLYL SSLSGHQDII HNPYNHQLKA SPGHMVSAVP ESLIDYMAFN  60
SNNVVNHQGF EFPEVSKETK KVVKKDRHSK IHTAQGLRDR RVRLSIGIAR QFFDLQDMLG  120
FDKASKTLDW LLKKSRKAIK EVVQAKNLNN EDEDFGNNGG DVAEEEEEEE EDGDKSFVYG  180
SSPDSCGEKV VCEVKKAEKR KKKSEVSNMS SEGSRAKARG KAKEMAYDHP ETISDITQSE  240
IMDPFNRSII FNEGQGMTHF FYNEAIEEFD NQESILTTRR FNLPANMGQS YNQRNGTFML  300
IDQGSTSNYN AIDLPQILDY NYDQNPFVDQ SFCAVTDTNF PRGTFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1489142154Putative transcription factor PCF6
5zkt_B1e-1489142154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0769s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0021300.0AC002130.2 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888583.10.0transcription factor TCP1
SwissprotQ9FYG70.0TCP1_ARATH; Transcription factor TCP1
TrEMBLD7KV110.0D7KV11_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20010590.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-147TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]