PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0602s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 176aa    MW: 20154.1 Da    PI: 9.6059
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0602s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-0593115123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+++F +   L  H+r+H
  Araha.0602s0006.1.p  93 HKCTICDQMFGTGQALGGHMRKH 115
                          79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-104873IPR007087Zinc finger, C2H2
SuperFamilySSF576673.98E-648115No hitNo description
SMARTSM003550.434971IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9724976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139121.4E-993116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.03793120IPR007087Zinc finger, C2H2
SMARTSM003550.01393115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKRERSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SQTNHNNHFE CKTCNRKFDS  60
FQALGGHRAS HKKPKLIVDQ EQVKHRNNEN DMHKCTICDQ MFGTGQALGG HMRKHRTSMT  120
TEQSVIPSVV YSRPVLNRCN SNKKILDLNL TPLENDLVLI FGKNLVPQID LKFVN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0602s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329660.0AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876215.11e-127zinc finger protein ZAT11
SwissprotQ9SLD43e-78ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLD7LUK31e-125D7LUK3_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.5__1736__AT3G53600.11e-126(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-126C2H2 family protein