PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0550s0048.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 298aa    MW: 34147.2 Da    PI: 4.8746
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0550s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.4e-1913103198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+k++  +++  s+rlv+p+ + + + ++   ++t +l+ ++g  W+vk   + ++++ + +++GW++Fvk+ngL ++Df++F++dg+++
  Araha.0550s0048.1.p  13 FLKIF--NSHEHSQRLVIPRGYNKYYPNP--LPQTAVLKKPEGSFWNVKW--TISQQEtISFQEGWEKFVKDNGLIDRDFLLFTYDGSRS 96 
                          66777..66666778*******9666644..889****************..555555599************************99888 PP

                          E..EEEEE- CS
                   B3  90 felvvkvfr 98 
                          f  +v+++r
  Araha.0550s0048.1.p  97 F--WVRIHR 103
                          8..999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.8E-209103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-2010103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.45111105IPR003340B3 DNA binding domain
CDDcd100173.68E-1711103No hitNo description
PfamPF023622.0E-1713103IPR003340B3 DNA binding domain
SMARTSM010191.2E-1713105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-6201283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-5201292IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.17206296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELENGFPPY PDFLKIFNSH EHSQRLVIPR GYNKYYPNPL PQTAVLKKPE GSFWNVKWTI  60
SQQETISFQE GWEKFVKDNG LIDRDFLLFT YDGSRSFWVR IHRDGLPLEP TAPIKIQEIS  120
DDEDETIGDG DHHMEEGDSH ENMIVSLSLG SSDEADDDDD YDTTICEVNK ASGSSKKGRV  180
ARKHRADSIA ASIDPETYLD DPKNPFFIST SSCSRRVLVI ARQVIKDYDL NFDGTIKLMD  240
GFGELTRKVG KWKDRVVVYK WDEMFTRNKA NQGDAIICEV IREEDVVRSI KVHFVKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-14131021199At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0550s0048.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937970.0AB493797.1 Arabidopsis thaliana At5g57720 mRNA for hypothetical protein, partial cds, clone: RAAt5g57720.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866225.10.0B3 domain-containing protein At5g57720 isoform X2
SwissprotQ9FHH11e-179Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLD7MNV00.0D7MNV0_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80014060.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-179B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]