PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0299s0007.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 189aa    MW: 21612 Da    PI: 4.6913
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0299s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.31e-3431181128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y+++PwdLp k+ +e ++wyf+s++         ++r+t++gyW + g d+
  Araha.0299s0007.1.p   3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYHYDPWDLPGKALGEGRQWYFYSRKT--------QERVTSNGYWGSMGMDE 83 
                          79*************************999.99***************87778899*****9975........5799************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ ++++vg+kk L+fy g++    +t+W+m+ey+l
  Araha.0299s0007.1.p  84 PIYTSsTHKKVGIKKYLTFYLGDS----QTNWIMQEYSL 118
                          ***9877888**********7654....68*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-441156IPR003441NAC domain
PROSITE profilePS5100541.9583156IPR003441NAC domain
PfamPF023655.1E-224118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YHYDPWDLPG KALGEGRQWY  60
FYSRKTQERV TSNGYWGSMG MDEPIYTSST HKKVGIKKYL TFYLGDSQTN WIMQEYSLPD  120
SSSSSSRSSK RPSRAASSSS HKPDYSKWVI CRVYEQSCSE EEDDDGTELS CLDEVFLSLD  180
DLDEVSLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-36116215171NO APICAL MERISTEM PROTEIN
1ut4_B3e-36116215171NO APICAL MERISTEM PROTEIN
1ut7_A3e-36116215171NO APICAL MERISTEM PROTEIN
1ut7_B3e-36116215171NO APICAL MERISTEM PROTEIN
3swm_A2e-36116218174NAC domain-containing protein 19
3swm_B2e-36116218174NAC domain-containing protein 19
3swm_C2e-36116218174NAC domain-containing protein 19
3swm_D2e-36116218174NAC domain-containing protein 19
3swp_A2e-36116218174NAC domain-containing protein 19
3swp_B2e-36116218174NAC domain-containing protein 19
3swp_C2e-36116218174NAC domain-containing protein 19
3swp_D2e-36116218174NAC domain-containing protein 19
4dul_A3e-36116215171NAC domain-containing protein 19
4dul_B3e-36116215171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0299s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187830.0AK118783.1 Arabidopsis thaliana At5g64530 mRNA for unknown protein, complete cds, clone: RAFL21-11-N14.
GenBankBT0257460.0BT025746.1 Arabidopsis thaliana At5g64530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864908.11e-122NAC domain-containing protein 104
SwissprotQ8GWK61e-121NC104_ARATH; NAC domain-containing protein 104
TrEMBLD7MRV01e-121D7MRV0_ARALL; ANAC104/XND1
STRINGfgenesh2_kg.8__2481__AT5G64530.11e-121(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-120xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]