PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0129s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 215aa    MW: 24979.3 Da    PI: 6.2334
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0129s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.82.3e-1581394127
                  NAM   4 GfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk...kvkaeekewyfFs...krdkkyatgkrknratk....s 80 
                          ++rF+P+dee+ + +L +k++  +   l+  + i+ +d y+++P + +k    +  e + wyf +   +r + +a++ r+nr ++     
  Araha.0129s0005.1.p   8 CVRFNPSDEEIFQTFLIPKLALPEdapLPN-SLIEPFDFYRFDPITAEKpgsVFFPEGNFWYFIIicvTRTRLTARSVRPNREIRtnpfL 96 
                          79*****************98777533333.56************997544433347889999752114555566788999965555778 PP

                  NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          g W++ g ++++++ ++   g k+t  +    +++  kt W m ey+
  Araha.0129s0005.1.p  97 GKWRKYGVTEKITQ-GEVFLGKKHTYDYL---NQQNLKTGWRMSEYE 139
                          99***********9.9999******9999...344469********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.4415156IPR003441NAC domain
SuperFamilySSF1019411.31E-197156IPR003441NAC domain
PfamPF023653.7E-119139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAAQNLHCVR FNPSDEEIFQ TFLIPKLALP EDAPLPNSLI EPFDFYRFDP ITAEKPGSVF  60
FPEGNFWYFI IICVTRTRLT ARSVRPNREI RTNPFLGKWR KYGVTEKITQ GEVFLGKKHT  120
YDYLNQQNLK TGWRMSEYER PGNAFQRLVV VHLFYKTTLD QTLLDDQQQE NEVHAHGNVV  180
GVDHVVDQEV EHHQIHGDVV EQIVNNQVIE KNLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0129s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869281.11e-128uncharacterized protein LOC9300309 isoform X3
TrEMBLD7MSW31e-128D7MSW3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80013571e-128(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.17e-10NAC domain containing protein 25