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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.0022s0001.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 432aa MW: 47606.3 Da PI: 8.2705 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.8e-05 | 66 | 86 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Araha.0022s0001.2.p 66 CEICGKGFQRDQNLQLHRRGH 86 *******************88 PP | |||||||
2 | zf-C2H2 | 11.2 | 0.0012 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C k++ +s+ k H +t+ Araha.0022s0001.2.p 140 WKCEKCAKRYAVQSDWKAHSKTC 162 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-5 | 63 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.59E-6 | 63 | 86 | No hit | No description |
PROSITE profile | PS50157 | 11.489 | 64 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 128 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.59E-6 | 135 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MTSEVLQTIS SGSGFAQSSS TMDHDESLIN PPLVKKKRNL PGNPDPEAEV IALSPKTLMA 60 TNRFLCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV RKRVYVCPEK TCVHHHSSRA 120 LGDLTGIKKH FCRKHGEKKW KCEKCAKRYA VQSDWKAHSK TCGTREYRCD CGTIFSRRDS 180 FITHRAFCDA LAEETAKINA VSHLNDLAAA GAAGSVNINY QYLMGTFIPP LQPFVQQPQT 240 NQNHHQHFQP PPPSSLSLWM GQDIAPPQPQ PQDYDWVFGN AKAASACIDN NNTHAEHITQ 300 NANAALLQKA AEIGATSTTT AATNDPSTFL QSFPLKSSDQ TTTYDGGEKF FALFGSNNNI 360 GLMSHSHDHQ EIENATNDVT VASALDELQN YPWKRRRVDG GGEGGGGGQT RDFLGVGVQT 420 LCHPSSINGW I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 393 | 397 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002685 | 0.0 | BT002685.1 Arabidopsis thaliana At5g44160/MLN1_8 gene, complete cds. | |||
GenBank | AY037202 | 0.0 | AY037202.1 Arabidopsis thaliana AT5g44160/MLN1_8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865381.1 | 0.0 | zinc finger family protein | ||||
Swissprot | Q9FFH3 | 0.0 | IDD8_ARATH; Zinc finger protein NUTCRACKER | ||||
TrEMBL | D7MN23 | 0.0 | D7MN23_ARALL; Zinc finger family protein | ||||
STRING | scaffold_800604.1 | 0.0 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 0.0 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.0022s0001.2.p |