PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Z2UCJ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 435aa    MW: 49191.4 Da    PI: 9.3425
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Z2UCJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26027.77.5e-0967162997
       DUF260   9 rrkCakdCvlapyfpaeqp...kkfanvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  + +C+++C++++ fp e +     +a++ ++F  + + k+l++     +e + ++ +  l + A  + + Pv+G +g +lk++++l+ ++++l ++
  Aradu.Z2UCJ  67 KDRCTENCPYRRFFPPEAEgsrTLYAILTEFFPPQCIKKFLSRDivnrDEPTFKKHLLGLRWMALQWKKRPVNGPYGSYLKIKKKLRIAQKKLRRM 162
                  459***********87653333778999************98753432333347778899****************************99998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.93858166IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-667162IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDAYDGTVRL GAINLKQHDL RAGAAGEFDS GPDVSVSSPV TRQKAAAAKQ FIENHYKNYL  60
QGLQDRKDRC TENCPYRRFF PPEAEGSRTL YAILTEFFPP QCIKKFLSRD IVNRDEPTFK  120
KHLLGLRWMA LQWKKRPVNG PYGSYLKIKK KLRIAQKKLR RMRFMHQVHR MRPIRGVRSE  180
PWKDRERWSI LQRWRSFTSN SIGYVHTAGA TVVHQFCHLG SFSFLGGGSV LNGSEGAAVV  240
ATAIKRNIME LQLGDLNEPT LLQLLVIFTT CHENETIIHQ FCHLGSFSFL GGGSVKKCWG  300
SWWSLYWCFG STHKSNKRIG HAVLVPEPVA PADPAATVPP NPSTDYATAD RNCATLPQIC  360
IIPLSRTKHI TQVVAAGLNL PFEEVPQCNV VEDLCERYFG PLFELLSHDK DPGPNGNDQV  420
DEANIVKQIR EVENY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152KIKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Z2UCJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-35AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.