PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Z1FZ2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YC
Protein Properties Length: 259aa    MW: 28891.7 Da    PI: 6.5076
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Z1FZ2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.91e-55781811101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Aradu.Z1FZ2  78 QLQAFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 175
                  89******99999************************************************************************************* PP

        NF-YC  96 vprdel 101
                  vpr++l
  Aradu.Z1FZ2 176 VPREDL 181
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.03E-3369172IPR009072Histone-fold
PfamPF008081.6E-21100163IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37101178IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDHQGHGQNP SMGVVSSGAQ LTYGSNPYQP NQMTGAPGSV VTSVGNMQSG QPAGAQLGQH  60
QLAYQHIHQQ QQQQLQQQLQ AFWANQYQEI EKVTDFKNHS LPLARIKKIM KADEDVRMIS  120
AEAPVIFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRED  180
LKDEVLASIP RGTMPVAGPA DAMPYCYMPP QHAPQVGPAG VIMGKPVMDP NMYAQQSHPY  240
MAPQMWPQPP DQRQSSPDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C6e-4188178294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B6e-4188178294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968567.10.0PREDICTED: nuclear transcription factor Y subunit C-9
RefseqXP_015968568.10.0PREDICTED: nuclear transcription factor Y subunit C-9
RefseqXP_016205500.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B29e-90NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLG7KYQ41e-169G7KYQ4_MEDTR; Nuclear transcription factor Y protein
TrEMBLI3TAX91e-170I3TAX9_MEDTR; Nuclear transcription factor Y subunit C2
STRINGGLYMA19G42460.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-81nuclear factor Y, subunit C9