PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YKL3P
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 293aa    MW: 31749.9 Da    PI: 5.1093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YKL3PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11118160754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+++L
  Aradu.YKL3P 118 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLREL 160
                  79*********************66......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.777111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-17114180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9117160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-14117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.68E-13118164No hitNo description
Gene3DG3DSA:4.10.280.107.5E-16118173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAFSQPLIGS ADMTSATEFP PATRLLPAGG TDDDAVALGA GFEMEAKWGE GEVEEGSIEA  60
SVWNYDSDEN VESGSKAVVV EESGNHSGGG NGNLSLSGGV NGGDQKGKKK GMPAKNLMAE  120
RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAIDYLREL LQRINDLHNE LESTPPGSSL  180
QSSTTSLQPL TPTPQTLPCR VKEELYPGVL PSPKNQPAKV EVRVREGRAV NIHMFCTRRP  240
GLLLSTMRAL DNLGFNGFAL DVFRAEQCRE GQDVLPEEIK AVLLDSAGIH DMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107125KKKGMPAKNLMAERRRRKK
2119126ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015971167.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-105ICE1_ARATH; Transcription factor ICE1
TrEMBLW9R8S91e-116W9R8S9_9R
STRINGPOPTR_0012s10780.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-88bHLH family protein