PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YCE11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 364aa    MW: 41086.2 Da    PI: 7.5698
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YCE11genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.97.1e-122202503059
                  T.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  30 a.gCpvkkkversaedpkvveitYegeHnhe 59 
                  + +C+vkk+vers +dp++v++tYeg+Hnh+
  Aradu.YCE11 220 KvKCNVKKRVERSYQDPSIVITTYEGQHNHH 250
                  559***************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-19156252IPR003657WRKY domain
SuperFamilySSF1182901.7E-5163185IPR003657WRKY domain
PROSITE profilePS5081120.266166252IPR003657WRKY domain
SMARTSM007741.8E-15171251IPR003657WRKY domain
PfamPF031062.3E-8201250IPR003657WRKY domain
SuperFamilySSF1182904.45E-8221252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MANNEDKDQF HFDPFYYNNH ELNQSNFPLF RMITNTSSSS HHHQEGFIDN NTTSFTDCLL  60
HGNSMDYNTL SRAFDLSCSS PEVISSSIDE NKNQLPSSSV VGGDSTTLNS SVSSSSNEAD  120
ASLTEEDSSS KSTKKHEKQP KGNNKNKPKK KEKKPREPRF AFMTKSEIDH LEDGYRWRKY  180
GQKASCSISP PPRKNKMMNG YGNSDAQSHQ QSTLILMTFK VKCNVKKRVE RSYQDPSIVI  240
TTYEGQHNHH CPATLRGSAA TVFASSPSLF ASTSLIRPTS FPQDFLSQLL PTYTTNNSNT  300
HQPLINNNNH HQNPIFQLNL GHNPHYPPPP PPSQEHQEQH HLQFPHDYGL LQDLLPSFPG  360
KQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A6e-131642531078Probable WRKY transcription factor 4
1wj2_A6e-131642531078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146153KPKKKEKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4244941e-33CU424494.2 Medicago truncatula chromosome 5 clone mth2-103o8, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973251.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A0B2PW451e-79A0A0B2PW45_GLYSO; Putative WRKY transcription factor 28
TrEMBLI1M6Y01e-79I1M6Y0_SOYBN; Uncharacterized protein
STRINGGLYMA14G03280.14e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-31WRKY DNA-binding protein 71