PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Y7XZN
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23606.7 Da    PI: 8.7993
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Y7XZNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.7e-15952144
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 k i n+s+r  t  kR+ g++KK  E+S+LC+++++ ii+ss++
  Aradu.Y7XZN  9 KYIANDSKRRATQKKRKSGLIKKVDEISTLCGVDACAIIYSSDD 52
                 5699*************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.269150IPR002100Transcription factor, MADS-box
CDDcd002667.82E-32285No hitNo description
SuperFamilySSF554554.45E-25395IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-10323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MARKKVELKY IANDSKRRAT QKKRKSGLIK KVDEISTLCG VDACAIIYSS DDPQPEVWPS  60
PSGVNRVISR FKEMPELEQN KKMMSQESFL RQRIQKGQDQ LKKLKNENRK KEMNNLMFQS  120
LGGYQSLDNA TMIDLNDLAW IIDQNINEVN KQMSKLQGQE GTSSNNNGVA TINEEQAQVD  180
NIINGGVFPF VDAANNFQND YCPTPFNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVELKYIANDSKRRATQKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015949921.11e-153PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-50AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A072UXE21e-68A0A072UXE2_MEDTR; MADS-box transcription factor family protein
STRINGPOPTR_0005s00420.17e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-44AGAMOUS-like 80