PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.XZ1FD
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 305aa    MW: 35342.3 Da    PI: 8.6316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.XZ1FDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042162186123
                  EEETTTTEEESSHHHHHHHHHH..T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                  + C+ C+k ++  ++++ H+++  H
  Aradu.XZ1FD 162 FYCELCNKQYKLAMEFEAHLSSydH 186
                  79*****************987555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004437.7E-1865110IPR000467G-patch domain
PROSITE profilePS5017416.73367112IPR000467G-patch domain
PfamPF015851.8E-1568108IPR000467G-patch domain
SuperFamilySSF576673.44E-5143197No hitNo description
PfamPF121716.5E-6162189IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280164186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDYRWTNGRQ DTGSGRDRRQ HKRDQAYQDS FVENSLEDFR LPINHRPTEN VDLENVEQAS  60
LDTQLTSSNI GFKLLQKMGW KGKGLGKDEQ GIIEPIKSGM RDPRLGVGKQ EEDDFFTAEE  120
NIQRRKLDIE LEETEENVRK REVLAEREQK IQTEVKEIRK VFYCELCNKQ YKLAMEFEAH  180
LSSYDHNHRK RFKQMKEMHG SSSRDDRQKR EQQRQEKEMA KFAQMADAQK QQRLQLQQES  240
GSASASSESK TATALTDQEQ RNTLKFGFSS KGTASKVSVG IKKPNIAKKK NVPISSIFGN  300
DSDEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.XZ1FD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968730.10.0G patch domain-containing protein 8
RefseqXP_020981983.10.0G patch domain-containing protein 8
RefseqXP_025603820.10.0G patch domain-containing protein 8
RefseqXP_025603821.10.0G patch domain-containing protein 8
TrEMBLA0A445CN310.0A0A445CN31_ARAHY; Uncharacterized protein
STRINGXP_007163288.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428