PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.XI98N
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 236aa    MW: 25640.3 Da    PI: 8.0923
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.XI98NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.72.7e-312103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e
  Aradu.XI98N   2 SCNGCRVLRKGCSETCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Aradu.XI98N 100 TVLR 103
                  8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7781107IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISNVPEAQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPS PEFMGMESAG  120
PVVATDEASE AEVTCGDIWK KVRDPNPSCR FTSSRSTRVA AGAAGKCKRL EEVTKVQTAA  180
DLDLRLTPIF LQKIADYRRR PGSPSMTSEE SVTTTAEIGG DQWGHSGERK VLNLFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.XI98N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025698197.11e-173LOB domain-containing protein 38
SwissprotQ9SZE81e-85LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A445ESX91e-172A0A445ESX9_ARAHY; Uncharacterized protein
STRINGXP_007155842.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.14e-88LOB domain-containing protein 39