PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.XEX7M
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 235aa    MW: 25921.4 Da    PI: 4.7093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.XEX7MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-1156961055
                 HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                 rrRR+++N+++  Lr+++P+ +      K++ ++iL  A++Y+k+Lq
  Aradu.XEX7M 56 RRRRKKLNDRLYMLRSVVPNiS------KMDRVSILGDAIDYMKELQ 96
                 9*******************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.4564695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-1252101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1656109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-115699No hitNo description
SuperFamilySSF474596.28E-1656114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-85696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEAVGGSGNA LFSGKGNGLE ALVVSNLKRV QEVEEASNEG SMWNSEEDDE RTDEVRRRRK  60
KLNDRLYMLR SVVPNISKMD RVSILGDAID YMKELQQRVN DLQNELESTP TSSSPSSSTS  120
IQPLTPTLQT LPCRVKEELC PVPIPGNQTA KVEVKVRDGK AVNIHMFCSR RPGLLVSTMQ  180
ALDNLGLDVQ QAVISCFNGF ALDIFKAEQC REGQDVLPEE IKAGLLDSAG IHDMM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939681.11e-157PREDICTED: transcription factor ICE1-like isoform X3
SwissprotQ9LSE22e-96ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A151T9331e-101A0A151T933_CAJCA; Transcription factor ICE1
TrEMBLC0JP292e-97C0JP29_LOTJA; Putative basic helix-loop-helix protein BHLH23
STRINGGLYMA16G26291.12e-96(Glycine max)
STRINGfgenesh2_kg.5__441__AT3G26744.24e-94(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.47e-82bHLH family protein