PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X6AKJ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 234aa    MW: 25850.9 Da    PI: 6.7844
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X6AKJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00096426123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+++F +   L  H++ H
  Aradu.X6AKJ  4 HRCKLCSRTFANGRALGGHMKAH 26
                 79******************998 PP

2zf-C2H217.71e-05134155223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C +Cgk+F+++  L +H + +
  Aradu.X6AKJ 134 QCDKCGKTFRSSGALGSHRSIC 155
                  8*****************9876 PP

3zf-C2H215.26.3e-05167189123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C+k+F +   L  H r+H
  Aradu.X6AKJ 167 FQCPYCSKVFGSGQALGGHKRSH 189
                  89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-7327IPR007087Zinc finger, C2H2
SuperFamilySSF576678.92E-5329No hitNo description
SMARTSM003550.042426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85133154IPR007087Zinc finger, C2H2
SMARTSM0035529133153IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.12E-8133189No hitNo description
PfamPF139120.0012134152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-4164189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012167189IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-12167189IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221167189IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MERHRCKLCS RTFANGRALG GHMKAHLATL PLPPKPHQPP PQPLSFEYSS SSSSSESEHD  60
DDDDEEKASI ATEAAEPVSS VSDTSPEEDL AMCLIMLSRD KWRKTSFEEE EEMKLKNKKV  120
LRGKHHHHHH HRLQCDKCGK TFRSSGALGS HRSICLCDEA DGSERIFQCP YCSKVFGSGQ  180
ALGGHKRSHL LPSSSSSSPA SIINANLRLK QQSFIDLNLP APPEEDDLSV LSDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.X6AKJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020999395.11e-115zinc finger protein ZAT9
TrEMBLA0A445D6R91e-107A0A445D6R9_ARAHY; Uncharacterized protein
STRINGGLYMA05G04690.13e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-31C2H2-like zinc finger protein