PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X23JQ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 237aa    MW: 25240.7 Da    PI: 5.7281
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X23JQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.76.5e-274107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+ +C++ p++     p++q++++ +++k++G++ +l+ll+a +++ r+++++sl+yeA+ r+ +Pv G++g++++++++l+++++e
  Aradu.X23JQ   4 SCNGCRVLRKGCNLECPIKPCLnwiksPESQSNATLFLAKFYGRAGLLNLLTAGDPKIRPAIFKSLLYEACGRIVNPVFGSTGLLSTGSWHLCEAAVE 101
                  6************************************************************************************************9 PP

       DUF260  94 lallke 99 
                  ++l ++
  Aradu.X23JQ 102 AVLSGA 107
                  988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7273109IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-224103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCNLECP IKPCLNWIKS PESQSNATLF LAKFYGRAGL LNLLTAGDPK  60
IRPAIFKSLL YEACGRIVNP VFGSTGLLST GSWHLCEAAV EAVLSGAPIR QQDASDGGGQ  120
LLNPSDIRHV VKRGKSCSSD HVLKPRKSQF KRRAEKSKPE PEVELDQGVA ELVVEACVVN  180
ELDDSASPDS GSGLSEHVSV VVGGGAEADS GSIESVNPAR ADDGELELEL TLGCQWL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.X23JQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015966681.11e-172LOB domain-containing protein 41
TrEMBLA0A445D2Q91e-169A0A445D2Q9_ARAHY; Uncharacterized protein
STRINGGLYMA07G10180.16e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-61LOB domain-containing protein 41