PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WF2VJ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 152aa    MW: 16827.1 Da    PI: 10.3386
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WF2VJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.3e-3286144360
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+k
  Aradu.WF2VJ  86 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHPK 144
                  99***********************9988****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.0E-174282IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.4E-3472144IPR003657WRKY domain
PROSITE profilePS5081129.99879145IPR003657WRKY domain
SuperFamilySSF1182906.93E-2882144IPR003657WRKY domain
SMARTSM007741.4E-3884144IPR003657WRKY domain
PfamPF031066.3E-2886143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSSTRSFISS LSIDGSVANM EGSAFHLIGA ARSSDQNSQQ HKRKCSARGD EASGGKCHCS  60
KKRKHRVKRS IKVPAISNKL ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSMRGCPARK  120
HVERCLEEPS MLIVTYEGEH NHPKLSTQSA NA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-2177142771WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14163KRKCSARGDEASGGKCHCSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753521e-123EU375352.1 Glycine max transcription factor (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204721.11e-109PREDICTED: probable WRKY transcription factor 21
SwissprotO043364e-82WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB0LUS11e-100B0LUS1_SOYBN; Transcription factor
STRINGGLYMA02G15920.16e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-75WRKY DNA-binding protein 21