PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.W74FU
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 234aa    MW: 26236.1 Da    PI: 6.1601
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.W74FUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.4e-06190212123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H ++H
  Aradu.W74FU 190 FVCEICKKGFQRDQNLQLHWQRH 212
                  89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF816601.24E-1522148IPR023299P-type ATPase, cytoplasmic domain N
PfamPF132461.1E-633106No hitNo description
Gene3DG3DSA:3.40.1110.101.2E-869141IPR023299P-type ATPase, cytoplasmic domain N
Gene3DG3DSA:3.30.160.603.8E-4189212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.71E-5189213No hitNo description
PROSITE profilePS501579.806190212IPR007087Zinc finger, C2H2
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
RKKEAEIKGT ESAEKLKTEI PEEAIFQNTS SEVVKDKTDN NTILGTATES ILLEFGLLED  60
GDLMHIVEPS NSVRNKMSVL VSLPNRGVRA FCKGASEIIL RICDKIIDSN GNDVDLPEEQ  120
ANKVNALRTL SVVVKDIDAT EGENSILDNG YTLIIVGLKR EFVLTSVIHA DSKAEVIAPS  180
PKSLMAMNRF VCEICKKGFQ RDQNLQLHWQ RHNLPWKLRQ REKEVVVRKK VDEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218229RQREKEVVVRKK
Functional Description ? help Back to Top
Source Description
UniProtThis magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol into small vacuoles.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.W74FU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020971580.15e-69calcium-transporting ATPase 4, plasma membrane-type isoform X2
RefseqXP_025633125.16e-69calcium-transporting ATPase 4, plasma membrane-type
SwissprotO222182e-35ACA4_ARATH; Calcium-transporting ATPase 4, plasma membrane-type
TrEMBLA0A445AHT74e-68A0A445AHT7_ARAHY; Calcium-transporting ATPase
STRINGXP_004498043.14e-52(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-21C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Geisler M,Frangne N,Gom├Ęs E,Martinoia E,Palmgren MG
    The ACA4 gene of Arabidopsis encodes a vacuolar membrane calcium pump that improves salt tolerance in yeast.
    Plant Physiol., 2000. 124(4): p. 1814-27
    [PMID:11115896]
  2. Axelsen KB,Palmgren MG
    Inventory of the superfamily of P-type ion pumps in Arabidopsis.
    Plant Physiol., 2001. 126(2): p. 696-706
    [PMID:11402198]
  3. Baxter I, et al.
    Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice.
    Plant Physiol., 2003. 132(2): p. 618-28
    [PMID:12805592]
  4. Hammes UZ, et al.
    Nematode-induced changes of transporter gene expression in Arabidopsis roots.
    Mol. Plant Microbe Interact., 2005. 18(12): p. 1247-57
    [PMID:16478044]
  5. Endler A, et al.
    Identification of a vacuolar sucrose transporter in barley and Arabidopsis mesophyll cells by a tonoplast proteomic approach.
    Plant Physiol., 2006. 141(1): p. 196-207
    [PMID:16581873]
  6. Lee SM, et al.
    Identification of a calmodulin-regulated autoinhibited Ca2+-ATPase (ACA11) that is localized to vacuole membranes in Arabidopsis.
    FEBS Lett., 2007. 581(21): p. 3943-9
    [PMID:17662727]
  7. Boursiac Y, et al.
    Disruption of the vacuolar calcium-ATPases in Arabidopsis results in the activation of a salicylic acid-dependent programmed cell death pathway.
    Plant Physiol., 2010. 154(3): p. 1158-71
    [PMID:20837703]
  8. Conn SJ, et al.
    Cell-specific vacuolar calcium storage mediated by CAX1 regulates apoplastic calcium concentration, gas exchange, and plant productivity in Arabidopsis.
    Plant Cell, 2011. 23(1): p. 240-57
    [PMID:21258004]
  9. Gfeller A, et al.
    Jasmonate controls polypeptide patterning in undamaged tissue in wounded Arabidopsis leaves.
    Plant Physiol., 2011. 156(4): p. 1797-807
    [PMID:21693672]