PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.W1WQU
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 155aa    MW: 18169.6 Da    PI: 8.6428
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.W1WQUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.63.1e-3611106195
       DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                  aCaaCk++r+kC+++ Cvlapyfpa+++++f +vhk+FG+sn++kl+k+++ee+r+++++sl++eA++r+rdP++G +g ++k+ +++++ k+e+ 
  Aradu.W1WQU  11 ACAACKHQRKKCSENnCVLAPYFPANRSREFYAVHKVFGVSNITKLVKSAKEEDRRRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKNKNEIM 106
                  7***********9877***************************************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6110112IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-3411106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MQRNNNGMHP ACAACKHQRK KCSENNCVLA PYFPANRSRE FYAVHKVFGV SNITKLVKSA  60
KEEDRRRVVD SLIWEACCRQ RDPIHGPYGE YTKVYNEYKK NKNEIMDSST TIYNAYCSNY  120
LHDLDNMMRQ EVVIPFQQHS QTYYITGFLV QTNEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1941194118LOB family transfactor Ramosa2.1
5ly0_B2e-1941194118LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.W1WQU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132691.13e-77hypothetical protein PHAVU_011G116500g
SwissprotQ9LNB91e-36LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A445DZT61e-97A0A445DZT6_ARAHY; Uncharacterized protein
STRINGXP_007132691.11e-76(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.15e-36LOB domain-containing protein 2