PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VE705
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 292aa    MW: 32729.7 Da    PI: 7.3954
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VE705genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29132189258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                   Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rs edp++++ tYegeHnh
  Aradu.VE705 132 MDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSVEDPTILVATYEGEHNH 189
                  6***************************99**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-28127190IPR003657WRKY domain
SuperFamilySSF1182909.15E-25130191IPR003657WRKY domain
SMARTSM007741.1E-33131191IPR003657WRKY domain
PROSITE profilePS5081125.304133192IPR003657WRKY domain
PfamPF031064.4E-24133189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDSTCVDTSL NLNLSPSPTH MNPTVAEVVL VEELHRLSSE NKRLTETLTH MCVSYEALQK  60
HLTKLMNTSS DCYNHHQSRK RKAESYENCN DEEESLFIKR PNNIVHHHNN NNNKVSKVLV  120
KTDASDSSLY VMDGYQWRKY GQKVTRDNPS PRAYFRCSFA PSCPVKKKVQ RSVEDPTILV  180
ATYEGEHNHG RSQTEISLVS SQSHSSETII PLVSSPSSRI MSSPTTLDLV KNSISCVDID  240
HNAQNKSSSS SYIHKFLVQE MATSLTSDPN FTAVLATAIS GKILEQTSLE KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-201311891471WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150364e-33AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972331.10.0PREDICTED: probable WRKY transcription factor 40 isoform X1
TrEMBLV7CSH51e-105V7CSH5_PHAVU; Uncharacterized protein
STRINGGLYMA14G11960.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-65WRKY DNA-binding protein 40