PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.U1JXN
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 192aa    MW: 21953.5 Da    PI: 7.9358
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.U1JXNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.1e-31106164259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK++kgse+prsYYrC+s  gC ++k+vers++dp+v+++tY+ eH+h+
  Aradu.U1JXN 106 SDGWAWRKYGQKPIKGSEYPRSYYRCSSCkGCLARKQVERSHSDPQVFIVTYTAEHTHP 164
                  6*************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-30105164IPR003657WRKY domain
SuperFamilySSF1182903.27E-26105165IPR003657WRKY domain
SMARTSM007742.0E-36105165IPR003657WRKY domain
PROSITE profilePS5081129.918106166IPR003657WRKY domain
PfamPF031064.9E-27107164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDWDLHAIVR GCTNTHQPDN ILGDLNYFQL SPQQEIDERF FKSHQFSETE TITTAIVDDE  60
LEELYKPFYP STTVDTTTSS HPTSAEVNKV LHLKPSDPTP SKCKRSDGWA WRKYGQKPIK  120
GSEYPRSYYR CSSCKGCLAR KQVERSHSDP QVFIVTYTAE HTHPPHPITT IPTNSQAQGT  180
VVGRGWKRRT NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-171061631571WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202141.11e-133PREDICTED: probable WRKY transcription factor 29
TrEMBLA0A067GLN82e-47A0A067GLN8_CITSI; Uncharacterized protein
STRINGGLYMA11G02361.12e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.19e-32WRKY family protein