PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.TH86V
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YC
Protein Properties Length: 267aa    MW: 29905.8 Da    PI: 6.1633
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.TH86VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.27.6e-56871901101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Aradu.TH86V  87 QLQSFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 184
                  89******99999************************************************************************************* PP

        NF-YC  96 vprdel 101
                  vpr++l
  Aradu.TH86V 185 VPREDL 190
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.53E-3379181IPR009072Histone-fold
PfamPF008081.7E-21109172IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-37110187IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMRMDPHQGH NQNPSMGVGG SGAQFPYGSN PYQPNQMTSS PGMVVPPIGT IQSTGQPATA  60
QLGQHQLAYQ HIHQQQQQQQ QMQLQQQLQS FWANQYQEIE KVTDFKNHSL PLARIKKIMK  120
ADEDVRMISA EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF  180
LVDIVPREDL KDEVLTSVPG GTMAVPGPAD SIPYCYMPPQ HAQVGAAGVM MGNPAMDPNL  240
YAQQPHPYIA PQMWPQPPEQ QQSPSDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C8e-41102187994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B8e-41102187994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939873.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015939874.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015939875.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_016174066.10.0PREDICTED: nuclear transcription factor Y subunit C-3
RefseqXP_016174067.10.0PREDICTED: nuclear transcription factor Y subunit C-3
RefseqXP_016174068.10.0PREDICTED: nuclear transcription factor Y subunit C-3
SwissprotQ9ZVL35e-88NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLG7KYQ41e-154G7KYQ4_MEDTR; Nuclear transcription factor Y protein
STRINGGLYMA19G42460.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.31e-82nuclear factor Y, subunit C3