PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.T8B3G
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 484aa    MW: 54031.9 Da    PI: 9.47
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.T8B3GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05100122123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k F r  nL+ H r H
  Aradu.T8B3G 100 FVCEVCNKGFQREQNLQLHRRGH 122
                  89*******************88 PP

2zf-C2H212.60.0004177199123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Aradu.T8B3G 177 WKCHKCSKKYAVQSDWKAHSKTC 199
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-699122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.49E-699122No hitNo description
PfamPF121713.0E-5100122IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.094100122IPR007087Zinc finger, C2H2
SMARTSM003550.0041100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM00355230142172IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.49E-6172197No hitNo description
SMARTSM00355140177197IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MAATSSSSTP FFQIRQENHE NLISQQQQQL LQSSSTTTSA PPPPPPPPLP QKKRRNHAAG  60
TPCKYLSHNK TLNPKFMYIL DPDAEVIALS PKTLMATNRF VCEVCNKGFQ REQNLQLHRR  120
GHNLPWKLKQ KNPNKEPKRK VYLCPEPTCV HHHPSRALGD LTGIKKHFSR KHGEKKWKCH  180
KCSKKYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT HRAFCDALAH ENASRHPPLN  240
PFGNLYPTNN NNNILSLGNR FQELQPHHQH QHQQEPLLFS TNNNNMNMFN LSFFPRSNNS  300
SGGGSSVITD HHHQIGSAFS SSSSSIFGNN NSSLQQQQQQ ENNNNNNDNN MCSPHMSATA  360
LLQKAAQMGS TTSTTNNSNH SASSLLRAMA NNNNNHHHHL NADVDNDEHN DNLRGLMNSL  420
ANENISSSIF GNVKENGNNH NNNNLAGVCF GGSDDKLTLD FLGVGGVIRN ITGISTTSFD  480
PTMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-32173233363Zinc finger protein JACKDAW
5b3h_F3e-32173233363Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.T8B3G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1156871e-46AC115687.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence.
GenBankAC1164261e-46AC116426.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence.
GenBankAP0149591e-46AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-46CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946932.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_020988184.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0L9UTT21e-156A0A0L9UTT2_PHAAN; Uncharacterized protein
STRINGXP_007153117.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-88indeterminate(ID)-domain 2