PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.SEH6L
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 514aa    MW: 56512.8 Da    PI: 8.9346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.SEH6LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-057294123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Aradu.SEH6L 72 FMCEICNKGFQRDQNLQLHRRGH 94
                 89*******************88 PP

2zf-C2H212.70.00038148170123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Aradu.SEH6L 148 WKCEKCSKKYAVQSDWKAHSKTC 170
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-67194No hitNo description
PfamPF121716.6E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997294IPR007087Zinc finger, C2H2
SMARTSM003550.0317294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355210113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-6143168No hitNo description
SMARTSM00355140148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSNLTSASNE GNNSVSSGTR TEIGTFMTPP PTSSDTSTQP PSKKKRNLPG NPDPDAEIIA  60
LSPKSLLATN RFMCEICNKG FQRDQNLQLH RRGHNLPWKL KQRTSKEIRK KVYVCPEPSC  120
VHHDPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QETARTTTTT STTTIPQLHH QFNNPQIFPL KKEPLQLHHQ  240
SFNLVRTELP PWLGSSSSSS NTPTPSQNNH QGQDFLNLHE NNENPNPNPN PNPRLVGVGG  300
PTIEGYPSAH MSATALLQKA AQMGATMSSS IGPHHQSHVS VNPSATLNHF PLNLSSRDHH  360
HHNHNHITTT TTTTTTTTTA APSSSSSLLH DVMMMNSFSS GFEAAQFDDP FGGILVSNNN  420
ITKKDGDDNG NGNDGNNNNN FLLHDTLPKA TTTTANDRGG RGGGAKEELT RDFLGLRPLS  480
HSDILSIAAM GNCMNDHQNQ PQKHWLINGL LAQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-36144208367Zinc finger protein JACKDAW
5b3h_F8e-36144208367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198110KLKQRTSKEIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.SEH6L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015938889.10.0protein indeterminate-domain 7 isoform X1
TrEMBLA0A445BNX80.0A0A445BNX8_ARAHY; Uncharacterized protein
STRINGGLYMA08G20520.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-101indeterminate(ID)-domain 7