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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.SD5C0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | SBP | ||||||||
Protein Properties | Length: 514aa MW: 56488 Da PI: 7.205 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 80.4 | 2.5e-25 | 126 | 185 | 2 | 61 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrs 61 Cqv gC++dls+ k+yh+rhkvCevhsk++vv+v+g+eqrfCqqCsr ++s f+ +k s Aradu.SD5C0 126 CQVYGCNKDLSSSKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRLVNFSSFNLSKYS 185 ******************************************************998876 PP | |||||||
2 | SBP | 45.9 | 1.5e-14 | 192 | 220 | 49 | 77 |
EEETTT--SS--S-STTTT-------S-- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkq 77 fh l efD++krsCr+rLa+hnerrrk+q Aradu.SD5C0 192 FHLLAEFDDGKRSCRKRLAGHNERRRKPQ 220 9**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.8E-28 | 120 | 206 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 27.444 | 123 | 219 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.46E-24 | 125 | 185 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.4E-20 | 126 | 183 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.4E-11 | 192 | 222 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-7 | 192 | 218 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MESSWDYVTE EDKGYVSNDA LSAAPPPPPS TLLRSKSSFL GWELKTPCSS FDNQCFEELG 60 FPELLGKPFS GRDSLIDLKL GRFADHADVN VASFSKGAPV LCSSVSSTAP KRPRGSLGLH 120 SQTSYCQVYG CNKDLSSSKD YHKRHKVCEV HSKTAVVIVN GIEQRFCQQC SRLVNFSSFN 180 LSKYSSLILD LFHLLAEFDD GKRSCRKRLA GHNERRRKPQ AGIHSGKAAR LLHPCGSGNI 240 LVVLVDSRFQ GTMLSSASFI SSDSDKYGMS SFWKHGSDFW HPESRSLFPS YNGKQFPFLH 300 ESGATPTTTE SIFYENNNQY KHVIAAQHPG SRPLFQNSSL GSDDFNLFDT SSTVQGLSGI 360 SDSCCALSLL SSQSQNSSGQ SSGIPFVPPM VSPSSHSHPC SISQVSEKIG MSSQTSSCRV 420 YDRFPSALNP ASGSQLSPIL ISDNNNIVNF EMADRIFQGS DFANARDRLS CEDVATIDLL 480 QLSSQLQRVE HQRQSLQEFN STDNSAVNLI LIWC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-25 | 115 | 218 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.SD5C0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015943723.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X1 | ||||
TrEMBL | A0A445AZ73 | 0.0 | A0A445AZ73_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA0005S50.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 4e-43 | SBP family protein |